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		<title>Using the NCBI BLAST tools</title>
		<link>http://notestack.wordpress.com/2010/08/19/using-the-ncbi-blast-tools/</link>
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		<pubDate>Thu, 19 Aug 2010 10:01:45 +0000</pubDate>
		<dc:creator>mschubert</dc:creator>
				<category><![CDATA[Blog]]></category>
		<category><![CDATA[blast]]></category>
		<category><![CDATA[ncbi]]></category>

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		<description><![CDATA[NCBI BLAST is probably the most widely used tool by biologists and bioinformaticians alike. There is no way of getting around the basic methodology used, as its usage is taught in almost every biology-related university curriculum. In most cases, the webinterface at either NCBI or (to a lesser extend) EBI are used. But both organizations provide standalone tools that are able to perform the same searches as their web counterparts as well as more specific types of queries.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=notestack.wordpress.com&amp;blog=14618577&amp;post=112&amp;subd=notestack&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<title>SSH tunneling and file transfer through multiple servers</title>
		<link>http://notestack.wordpress.com/2010/07/10/ssh-and-file-transfer-via-multiple-servers/</link>
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		<pubDate>Sat, 10 Jul 2010 20:16:01 +0000</pubDate>
		<dc:creator>mschubert</dc:creator>
				<category><![CDATA[Blog]]></category>
		<category><![CDATA[linux]]></category>
		<category><![CDATA[ssh]]></category>
		<category><![CDATA[tutorial]]></category>

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		<description><![CDATA[In bioinformatics, there some computationally intensive tasks such as the NGS assemblies I am currently working on. They are often performed on remote machines, and a direct SSH connection to the server is often not allowed due to some security policy. So here is my first tutorial on how to make one's life easier when facing this problem, mostly because I myself might need this information again one day.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=notestack.wordpress.com&amp;blog=14618577&amp;post=4&amp;subd=notestack&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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